AlphaFold 3 · execution view

Follow the state

Walk one small complex through tokenization, the recycling trunk, diffusion sampling, and output contracts.

Appearance

Synthetic teaching trace Shapes and stage order come from the AF3 architecture source. Preview numbers are deterministic toy values. No AF3 weights, activations, predictions, or confidence scores are used.

PeptideAla-Gly-Val-Leu-Ser-Lys

LigandATP

IonMg²⁺

Heavy atoms71

Tokens38

Before

After

Transformation

Source-backed architecture

Open this stage on the architecture map ↗

Inspect a loop

These controls change the selected teaching checkpoint.

Recycle pass 1 / 4The first pass has zero previous state. Pairformer block 1 / 48Preview one repeated block within a pass. Sampler step 1 / 200Follow the toy coordinate update. Diffusion sample 1 / 5AF3 draws five samples per run, each from its own starting noise.